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Thread: Energy and chemical bonds

Page history last edited by Joe Redish 10 years, 8 months ago

 Assessing CompetenciesPotential Modules or Threads

 

Below are some of the most relevant pages (HW, Clicker Questions, Quizzes and Exams, Readings) from Physics 131/132 that could be viewed as forming a chemical bond energy "thread" leading up to the ATP hydrolysis essay ("capstone assessment") on the first midterm exam in Physics 132.  This includes some traditional discussion of potential energy not specifically related to bond energy, since that conceptual work is a necessary pre-requisite.

 

Thread Component

Intention

Examples of tasks that develop/link thread

Overlap with Representation Thread (Graphical) Overlap with interdisciplinary epistemology thread

Kinematics of both macroscopic and molecular motion

to include patterns of motion relevant at molecular scales (i.e. both translational and vibrational motion)

Cell motion?

Paramecium?

 

   

Inclusion of electrostatic forces in force unit

to emphasize the forces that are relevant at cellular scales

 

to build up model of bond as equilibrium or attractive and repulsive forces

Protein unfolding

Interpret and create diagrams (rxn coordinates)

Interpret graph (force extension) 

 

Conservation of mechanical energy

to connect transformations between PE and KE in macro context

Energy Skate Park (PhET)

Interpreting, mentally running (link to physical picture) and creating graphs (mechanical energy graphs)  

Electric potential energy is included as one type of potential energy

emphasize the connections among different types of energy relevant across physics, biology and chemistry

 

to build up model of chemical energy in bonds

 

   
Link Electrostatic Force to Electric PE   Water Coat Potential    

Build up a model for chemical bonds using Lennard-Jones Potential

to develop idea of chemical bond as a negative PE at the bottom of "well"

 

Interpreting graphs, mentally running graphs (L-J)  

Link macro representations of PE and KE to molecular bonding

 

Bound States

 

Link L-J model to chemical reactions 

Explain exo and endothermic rxns in terms of changes in potential and kinetic energy at the molecular scale

Going to deeper well

ATP Essay Question

Mentally running graph (link to dynamic physical picture) Reconciling chemical energy 

Link macroscopic ideas about work-energy to work in context of chemical reactions

 

Gauss Gun?

  Analogy
Link physical models of chemical reactions to explain macro-level biological phenomena  

Muscle contraction

Kinesin Walking

Temperature Regulation

creating charts (energy-bar charts)

evaluating representations (e.g against conservation of energy)

Linking 

Include chemical energy as component of internal energy

Connects First Law (JSG?)  to chemical reactions

 

   
Linking L-J Model and SHO to link to internal energy   Diatomic Vibrations (recitation)    

Enthalpy and free energy

Connects ideas about work and chemical energy

Enthalpy Calc. for single molecule

   

 

 

 

Wrappings for Energy and Chemical Bonds Thread

 

Chemical Energy Competency Table

 

Physics 131/132 Readings (assigned 10/31/11 through 11/18/11 in Phys 131 and reviewed at the start of 132):

Readings  F11/S12 Student Responses F12/S13 Student Responses 
Energy: The Quantity of Motion  20111031-1  R121116-1 
20111031-2  R121116-2 
20111102-1  R121119-1 
20111102-2 

R121119-2

  R121119 
20111104-1  R121121-1 
20111104-2  R121121-2 
20111107-1  R121126-1 
20111107-2  R121126-2 
20111116-1 R121128-1 
  R121130 

20111116-2

R121128-2 
   
20111118-2  R121130-
   

 

 

Reviewing Energy in 132

 

 

Physics 131/132 HW:

Homework Task  Fall 2011/Spring 2012 Student Responses  Fall 2012/Spring 2013 Student Responses 
Water coat forces   due 10/19/12
Energy-Skate Park  due 11/09/11   
The Water-Coat Potential  due 11/23/11  due 11/30/12 
Bound States  due 11/23/11  due 11/30/12 
Going to a Deeper Well  due 11/23/11  due 11/30/12 (hw10)
Energy and Enthalpy due 11/23/11   

Muscle Contraction 

Additional Assessments for Muscle Contraction

due 11/30/11  due 12/7/12 (hw11)

Thermal to Chemical Energy Transfer 

Rubric for above problem

due 11/30/11  due 12/7/12 
Bulldog on the Skateboard due 2/1/12 due 11/30/12; due 2/1/13 
What's Conserved due 2/1/12 due 12/7/12; due 2/1/13 
The Gauss Gun due 2/1/12 due 2/1/13 
Potential Energy Analogs for Chemical Reactions due 2/1/12 due 12/7/12 
Enthalpy Calculation for a single molecule  
due 2/8/13 
Workin' and Actin  
due 2/15/13 
Diatomic Vibrations  
due 4/5/13

 

 

Physics 131/132 Clicker Questions:

Topic  2011/2012 2012/2013 
work, energy, and energy conservation  11/2  video clip 11/16 
forces and energy  11/4  11/19; 11/21 
force - energy representations  12/5  *11/26; 11/30 
chemical energy (binding and thermal)   *11/181/302/1; 2/8; 2/10  *11/30 
electric PE, energy conservation   11/28; 12/7
temperature and heat, thermal energy *11/30 *12/3

 

*indicates video I might want to look at (JSG)

 

Physics 131/132 Quizzes and Exams:

 

Quiz 8, Phys 131 (11/7/11)

Quiz 9, Phys 131 (11/20/11)

Final Exam Problem 4, Phys 131 (12/21/11)

Quiz 1, Phys 132 (2/6/12):

Exam 1 Problem 4, Phys 132 (3/9/12)

Rubric for above problem

Exam 1 makeup Problem 2, Phys 132 (3/28/12)

 

Physics 131/132 Recitation Tasks

 

Task description  Reflections  Video Clips/Transcriptions 

2011/2012

Kinesin
How a Kinesin Walks - Revision  
   

Protein Unfolding

Protein (un)folding problem 

Content Log 111011

 

Reflections 111011

 

Energy Skate Park

Energy Skate Park

(Activity2 &Activity4)

 

Content Log 111711

 

Reflections 111711

 

Temperature regulation

 

Content Log 120111

 

Reflections 120111

 
2012/2013  

Energy Skate Park (11/20/12)

Energy skate park additional questions.docx

Skate Park_Activity2(1).pdf

Skate Park_Activity4(1).pdf

JR Recitation 112012

 

WL Recitation 112012 

 

Protein Stability (11/27/12)

Protein Stability Task-revised.doc

JR Recitation 112712

 

WL Recitation 112712

 

Temperature Regulation (12/4/12)

Temperature regulation - 2012 revision

 Temperature regulation - 2012 revision.pdf

 

JR Recitation 120412

 

WL Recitation 120412

 
Kinesin revised (1/29/13) JR Recitation 012913    
Diatomic Vibrations (4/9/13) JR Recitation 040913   
Photosynthesis (4/23/13) JR Recitation 042313 "So what is chemical energy?"

 

 

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